BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB013D09SP1|AL426518
(657 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1233 961 0.0
>3x_Contig1233
Length = 4604
Score = 961 bits (469), Expect = 0.0
Identities = 602/657 (91%), Gaps = 8/657 (1%)
Strand = Plus / Minus
Query: 1 acgtwagaatgtgatacttaataactagttaggacagtctatttgaaggaatgccccgtt 60
|||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 1703 acgttagaatgtgatacttaataactagttagg-cagtctatttga-ggaatgccccgtt 1646
Query: 61 ggttagatccatttcgagatcgtaatcgacttrgaamwctrtgtataatgtttctgggtc 120
|||||| ||||||||||||||||||||||||| ||| || |||||||||||||||||||
Sbjct: 1645 ggttagctccatttcgagatcgtaatcgacttggaactctgtgtataatgtttctgggtc 1586
Query: 121 cgaagtgttgaaawatgwgaaatmagcctcctaatcwacaaamaatttcttttmaagaca 180
||||||||||||| ||| ||||| |||||||| ||| ||| |||||||||| |||||
Sbjct: 1585 cgaagtgttgaaatatgtgaaatcagcctcctcatctccaatcaatttcttttcaagac- 1527
Query: 181 caaatatgactrccgawtcgatragaaactaaacwtggcaacawtwatccawcaaartaa 240
|| || ||||| |||| ||||| || |||| ||| |||||||| | |||| ||| |||
Sbjct: 1526 cagatctgactgccgattcgatgagcaactgaacttggcaacatttctccatcaaggtaa 1467
Query: 241 ataaataacctgcctcawccrcagtcwmtccaacggtcaaaagcmcatggttwtgtaaga 300
||||||| ||||||||| || | ||| |||||||||||||||| ||||||| |||||||
Sbjct: 1466 ataaatagcctgcctcatccgccgtctctccaacggtcaaaagcccatggttttgtaaga 1407
Query: 301 tgattgctttgttatcaccmaatgcttcagccagtctttgtccctccwmatattccaata 360
||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||
Sbjct: 1406 tgattgctttgttatcacccaatgcttcagccagtctttgtccctcctcatcttccaata 1347
Query: 361 ccacaccammaaacgaactacgtacacagtatgcttcttgataaaamatgcaaacatcca 420
|||||||| |||||| || |||||||||||||||||||| ||||| ||||||||||||
Sbjct: 1346 ccacaccaccaaacga-ct-cgtacacagtatgcttcttg-taaaacatgcaaacatcc- 1291
Query: 421 tggtttaacatttctaatggtttacaaaacagcagacaatgccttaccatacgtggaatg 480
||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||
Sbjct: 1290 tggtttaacatttctaatggtttaccaaac-gcagaccatgccttaccatacgtggaatg 1232
Query: 481 ggtatgacaagcagcattaacatctggccttgccttgtgtaaatgagagtggatcttgaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1231 ggtatgacaagcagcattaacatctggccttgccttgtgtaaatgagagtggatcttgaa 1172
Query: 541 acctgcagcattgatagcagcctggttcccatcaggtaaaatgttacattcctcatcgac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1171 acctgcagcattgatagcagcctggttcccatcaggtaaaatgttacattcctcatcgac 1112
Query: 601 atgcactagagctgacactgtcatctgagagaagtgtaaacmcaaaggattgatcca 657
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1111 atgcactagagctgacactgtcatctgagagaagtgtaaacccaaaggattgatcca 1055
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.42 0.718 1.34
Gapped
Lambda K H
1.42 0.718 1.34
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2768
Number of Sequences: 1807
Number of extensions: 2768
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 657
length of database: 10,358,551
effective HSP length: 16
effective length of query: 641
effective length of database: 10,329,639
effective search space: 6621298599
effective search space used: 6621298599
T: 0
A: 40
X1: 5 (10.2 bits)
X2: 14 (28.7 bits)
S1: 11 (23.0 bits)
S2: 49 (100.8 bits)